Class: TraitValue

URI: traitvalue:TraitValue

classDiagram class TraitValue click TraitValue href "../TraitValue/" TraitValue : body_mass TraitValue : body_mass_ambiguous TraitValue : body_mass_units_inferred TraitValue : catalogNumber TraitValue : countryCode TraitValue : day TraitValue : decimalLatitude TraitValue : decimalLongitude TraitValue : dynamicProperties TraitValue : ear_from_notch TraitValue : ear_length TraitValue : ear_length_units_inferred TraitValue : embryo_count TraitValue : embryo_length TraitValue : embryo_size_units_inferred TraitValue : family TraitValue : fieldNotes TraitValue : forearm_length TraitValue : genus TraitValue : hind_foot_length TraitValue : hind_foot_length_units_inferred TraitValue : hind_foot_with_claw TraitValue : institutionCode TraitValue : lactation TraitValue : life_stage TraitValue : month TraitValue : nipple TraitValue : nipple_count TraitValue : occurrenceID TraitValue : occurrenceRemarks TraitValue : order TraitValue : pregnancy TraitValue : scientificName TraitValue : sex TraitValue : specificEpithet TraitValue : stateProvince TraitValue : tail_length TraitValue : tail_length_estimated TraitValue : tail_length_units_inferred TraitValue : testicle_description TraitValue : testicle_length TraitValue : testicle_size_units_inferred TraitValue : testicle_width TraitValue : total_length TraitValue : total_length_ambiguous TraitValue : total_length_estimated TraitValue : total_length_units_inferred TraitValue : tragus_length TraitValue : vagina TraitValue : year

Slots

Name Cardinality and Range Description Inheritance
occurrenceID 0..1
String
Identifies the record that contains the trait data values direct
institutionCode 0..1
String
direct
catalogNumber 0..1
String
direct
scientificName 0..1
String
direct
order 0..1
String
direct
family 0..1
String
direct
genus 0..1
String
direct
specificEpithet 0..1
String
direct
day 0..1
Integer
The day of the month that the trait was recorded direct
month 0..1
Integer
The month that the trait was recorded direct
year 0..1
Integer
The year that the trait was recorded direct
countryCode 0..1
String
The country where the specimen with the trait was found direct
stateProvince 0..1
String
The state where the specimen with the trait was found direct
decimalLatitude 0..1
Float
The latitude where the specimen with the trait was found direct
decimalLongitude 0..1
Float
The longitude where the specimen with the trait was found direct
dynamicProperties 0..1
String
direct
occurrenceRemarks 0..1
String
direct
fieldNotes 0..1
String
direct
body_mass 0..1
Float
The mass of specimen having the trait direct
body_mass_ambiguous 0..1
Boolean
Specifies if the recorded body mass is ambiguous direct
body_mass_units_inferred 0..1
Boolean
Specifies if the body mass units were inferred direct
ear_from_notch 0..1
Float
Length of the ear from the notch to the tip direct
ear_length 0..1
Float
The length of an external ear direct
ear_length_units_inferred 0..1
Boolean
Specifies if the ear length units were inferred direct
embryo_count 0..1
Integer
The number of embryos observed in uterus direct
embryo_length 0..1
Float
The length of an embryo direct
embryo_size_units_inferred 0..1
Boolean
Specifies if the embryo size units were inferred direct
forearm_length 0..1
Float
The length of a forearm direct
hind_foot_length 0..1
Float
The lengh of a hindfoot direct
hind_foot_length_units_inferred 0..1
Boolean
Specifies if the hind foot length units were inferred direct
hind_foot_with_claw 0..1
Float
A length measurement of a hindfoot that includes the nail direct
lactation 0..1
String
Secretion or expression of milk from the mammary glands direct
life_stage 0..1
String
The age class or life stage of the dwc:Organism(s) at the time the dwc:Occurr... direct
nipple 0..1
String
The morphology of the specimen's nipple(s) direct
nipple_count 0..1
Integer
The number of nipples the specimen has direct
pregnancy 0..1
String
The specimen's uterus contains a developing embryo, fetus, or unborn offsprin... direct
sex 0..1
String
The biological sex of the specimen direct
tail_length 0..1
Float
The length of the specimen's tail direct
tail_length_estimated 0..1
Boolean
Specifies if the tail length was estimated direct
tail_length_units_inferred 0..1
Boolean
Specifies if the tail length units were inferred direct
testicle_description 0..1
String
The morphology of a testis direct
testicle_length 0..1
Float
The length of the long axis of testis spheroid direct
testicle_size_units_inferred 0..1
Boolean
Specifies if the testis size units were inferred direct
testicle_width 0..1
Float
The length of the short axis of testis spheroid (perpendicular to long axis a... direct
total_length 0..1
Float
Total length of the specimen direct
total_length_ambiguous 0..1
Boolean
Specifies if the total length recorded is ambiguous direct
total_length_estimated 0..1
Boolean
Specifies if the total length was estimated direct
total_length_units_inferred 0..1
Boolean
Specifies if the total length units were inferred direct
tragus_length 0..1
Float
The length of the specimen's tragus direct
vagina 0..1
String
The degree of perforation of the female vagina direct

Identifier and Mapping Information

Schema Source

Mappings

Mapping Type Mapped Value
self traitvalue:TraitValue
native traitvalue:TraitValue

LinkML Source

Direct

name: TraitValue
from_schema: https://w3id.org/FOVT/linkml/traitvalue
slots:
- occurrenceID
- institutionCode
- catalogNumber
- scientificName
- order
- family
- genus
- specificEpithet
- day
- month
- year
- countryCode
- stateProvince
- decimalLatitude
- decimalLongitude
- dynamicProperties
- occurrenceRemarks
- fieldNotes
- body_mass
- body_mass_ambiguous
- body_mass_units_inferred
- ear_from_notch
- ear_length
- ear_length_units_inferred
- embryo_count
- embryo_length
- embryo_size_units_inferred
- forearm_length
- hind_foot_length
- hind_foot_length_units_inferred
- hind_foot_with_claw
- lactation
- life_stage
- nipple
- nipple_count
- pregnancy
- sex
- tail_length
- tail_length_estimated
- tail_length_units_inferred
- testicle_description
- testicle_length
- testicle_size_units_inferred
- testicle_width
- total_length
- total_length_ambiguous
- total_length_estimated
- total_length_units_inferred
- tragus_length
- vagina

Induced

name: TraitValue
from_schema: https://w3id.org/FOVT/linkml/traitvalue
attributes:
  occurrenceID:
    name: occurrenceID
    description: Identifies the record that contains the trait data values.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: occurrenceID
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  institutionCode:
    name: institutionCode
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: institutionCode
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  catalogNumber:
    name: catalogNumber
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: catalogNumber
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  scientificName:
    name: scientificName
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: scientificName
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  order:
    name: order
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: order
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  family:
    name: family
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: family
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  genus:
    name: genus
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: genus
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  specificEpithet:
    name: specificEpithet
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: specificEpithet
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  day:
    name: day
    description: The day of the month that the trait was recorded.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: day
    owner: TraitValue
    domain_of:
    - TraitValue
    range: integer
  month:
    name: month
    description: The month that the trait was recorded.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: month
    owner: TraitValue
    domain_of:
    - TraitValue
    range: integer
  year:
    name: year
    description: The year that the trait was recorded.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: year
    owner: TraitValue
    domain_of:
    - TraitValue
    range: integer
  countryCode:
    name: countryCode
    description: The country where the specimen with the trait was found.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: countryCode
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  stateProvince:
    name: stateProvince
    description: The state where the specimen with the trait was found.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: stateProvince
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  decimalLatitude:
    name: decimalLatitude
    description: The latitude where the specimen with the trait was found.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: decimalLatitude
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  decimalLongitude:
    name: decimalLongitude
    description: The longitude where the specimen with the trait was found.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: decimalLongitude
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  dynamicProperties:
    name: dynamicProperties
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: dynamicProperties
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  occurrenceRemarks:
    name: occurrenceRemarks
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: occurrenceRemarks
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  fieldNotes:
    name: fieldNotes
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: fieldNotes
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  body_mass:
    name: body_mass
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf OBA:VT0001259
    description: The mass of specimen having the trait.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - OBA:VT0001259
    rank: 1000
    alias: body_mass
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  body_mass_ambiguous:
    name: body_mass_ambiguous
    description: Specifies if the recorded body mass is ambiguous.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: body_mass_ambiguous
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  body_mass_units_inferred:
    name: body_mass_units_inferred
    description: 'Specifies if the body mass units were inferred. '
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: body_mass_units_inferred
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  ear_from_notch:
    name: ear_from_notch
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf FOVT:0000005
    description: Length of the ear from the notch to the tip.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: ear_from_notch
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  ear_length:
    name: ear_length
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf OBA:0003426
    description: The length of an external ear.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - OBA:0003426
    rank: 1000
    alias: ear_length
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  ear_length_units_inferred:
    name: ear_length_units_inferred
    description: 'Specifies if the ear length units were inferred. '
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: ear_length_units_inferred
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  embryo_count:
    name: embryo_count
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf  UBERON:0000995
    description: The number of embryos observed in uterus.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - UBERON:0000995
    - UBERON:0009098
    rank: 1000
    alias: embryo_count
    owner: TraitValue
    domain_of:
    - TraitValue
    range: integer
  embryo_length:
    name: embryo_length
    description: The length of an embryo.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: embryo_length
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  embryo_size_units_inferred:
    name: embryo_size_units_inferred
    description: 'Specifies if the embryo size units were inferred. '
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: embryo_size_units_inferred
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  forearm_length:
    name: forearm_length
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf FOVT:0001379
    description: The length of a forearm.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - FOVT:0001379
    rank: 1000
    alias: forearm_length
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  hind_foot_length:
    name: hind_foot_length
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf OBA:1000049
    description: The lengh of a hindfoot.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - OBA:1000049
    rank: 1000
    alias: hind_foot_length
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  hind_foot_length_units_inferred:
    name: hind_foot_length_units_inferred
    description: 'Specifies if the hind foot length units were inferred. '
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: hind_foot_length_units_inferred
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  hind_foot_with_claw:
    name: hind_foot_with_claw
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf FOVT:0000003
    description: A length measurement of a hindfoot that includes the nail.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - FOVT:0000003
    rank: 1000
    alias: hind_foot_with_claw
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  lactation:
    name: lactation
    description: Secretion or expression of milk from the mammary glands.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - UBERON:0001911
    rank: 1000
    alias: lactation
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  life_stage:
    name: life_stage
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf UBERON:0000105
    description: The age class or life stage of the dwc:Organism(s) at the time the
      dwc:Occurrence was recorded.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - dwc:lifeStage
    - UBERON:0000105
    rank: 1000
    alias: life_stage
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  nipple:
    name: nipple
    description: The morphology of the specimen's nipple(s).
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - OBA:VT0006078
    rank: 1000
    alias: nipple
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  nipple_count:
    name: nipple_count
    description: The number of nipples the specimen has.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - OBA:VT1000206
    rank: 1000
    alias: nipple_count
    owner: TraitValue
    domain_of:
    - TraitValue
    range: integer
  pregnancy:
    name: pregnancy
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf UBERON:0000995
    description: The specimen's uterus contains a developing embryo, fetus, or unborn
      offspring.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - UBERON:0000995
    - GO:0007565
    rank: 1000
    alias: pregnancy
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  sex:
    name: sex
    description: The biological sex of the specimen.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - PATO:0000047
    rank: 1000
    alias: sex
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  tail_length:
    name: tail_length
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf OBA:VT0002758
    description: The length of the specimen's tail.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - OBA:VT0002758
    rank: 1000
    alias: tail_length
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  tail_length_estimated:
    name: tail_length_estimated
    description: Specifies if the tail length was estimated.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: tail_length_estimated
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  tail_length_units_inferred:
    name: tail_length_units_inferred
    description: 'Specifies if the tail length units were inferred. '
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: tail_length_units_inferred
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  testicle_description:
    name: testicle_description
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf OBA:VT0001146
    description: The morphology of a testis.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - OBA:VT0001146
    rank: 1000
    alias: testicle_description
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string
  testicle_length:
    name: testicle_length
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf FOVT:0001057
    description: The length of the long axis of testis spheroid.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - FOVT:0001057
    rank: 1000
    alias: testicle_length
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  testicle_size_units_inferred:
    name: testicle_size_units_inferred
    description: 'Specifies if the testis size units were inferred. '
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: testicle_size_units_inferred
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  testicle_width:
    name: testicle_width
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf FOVT:0001368
    description: The length of the short axis of testis spheroid (perpendicular to
      long axis at midpoint).
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - FOVT:0001368
    rank: 1000
    alias: testicle_width
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  total_length:
    name: total_length
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf OBA:VT0001256
    description: Total length of the specimen. Fish:Total length (TL) is the length
      of a fish measured from the tip of the snout to tip of the longest lobe of caudal
      fin. Measurement done with caudal fin lobes compressed and measured at midline.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - OBA:VT0001256
    rank: 1000
    alias: total_length
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  total_length_ambiguous:
    name: total_length_ambiguous
    description: Specifies if the total length recorded is ambiguous.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: total_length_ambiguous
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  total_length_estimated:
    name: total_length_estimated
    description: Specifies if the total length was estimated.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: total_length_estimated
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  total_length_units_inferred:
    name: total_length_units_inferred
    description: 'Specifies if the total length units were inferred. '
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    rank: 1000
    alias: total_length_units_inferred
    owner: TraitValue
    domain_of:
    - TraitValue
    range: boolean
  tragus_length:
    name: tragus_length
    annotations:
      pun_as:
        tag: pun_as
        value: rdf:type owl:Class; rdfs:subClassOf UBERON:0010887
    description: The length of the specimen's tragus.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - UBERON:0010887
    rank: 1000
    alias: tragus_length
    owner: TraitValue
    domain_of:
    - TraitValue
    range: float
  vagina:
    name: vagina
    description: The degree of perforation of the female vagina.
    from_schema: https://w3id.org/FOVT/linkml/traitvalue
    related_mappings:
    - OBA:VT0001139
    rank: 1000
    alias: vagina
    owner: TraitValue
    domain_of:
    - TraitValue
    range: string